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plenti cmv puro dest empty vector  (Addgene inc)


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    Structured Review

    Addgene inc plenti cmv puro dest empty vector
    Plenti Cmv Puro Dest Empty Vector, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 330 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/empty+vector/pLenti+CMV+Puro+DEST+(w118-1)+(Plasmid+%2317452)/bio_rxiv__64898__2026__03__28__714855-261-8-23
    Average 96 stars, based on 330 article reviews
    plenti cmv puro dest empty vector - by Bioz Stars, 2026-09
    96/100 stars

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    Related Articles

    Transfection:

    Article Title: K-Homology Splicing Regulatory Protein (KSRP) Augments Survival and Proliferation of Human Melanoma Cells
    Article Snippet: Cells were seeded in Dulbecco’s Modified Eagle’s Medium (DMEM, Thermo Fisher Scientific, Waltham, MA, USA) with 10% fetal bovine serum (Thermo Fisher Scientific, Waltham, MA, USA), 100 U/mL penicillin, and 100 μg/mL streptomycin (Thermo Fisher Scientific, Waltham, MA, USA) at 37 °C in 5% CO 2 . .. For KSRP knoc down, 293 T cells (5 × 10 6 /well) were transfected with KSRP shRNA (Dharmacon A Horizon Discovery Group company, Lafayette, CO, USA) or empty vector (pLVX-IRES-Puro, 50 nM, (Addgene, Watertown, MA, USA), using PolyJet reagent (SignaGen Laboratories, Rockville, MD, USA) according to the manufacturer’s protocol. ..

    Article Title: Spatial tumor immune heterogeneity facilitates subtype co-existence and therapy response in pancreatic cancer
    Article Snippet: .. Patient-derived primary cell line GCDX62 was maintained in a 3:1 mixture of Keratinocyte-SFM (KSF; Thermo Fisher Scientific; supplemented with 2% (v/v) FCS, 1% (v/v) Penicillin-streptomycin, bovine pituitary extract (BPE), and human epidermal growth factor) and RPMI 1640 containing 10% (v/v) FCS. cJUN overexpression (cJUN-OE; construct pMSCV-cJUN, no. 34898, addgene) and empty vector (EV; construct MSCV, no. 68469, addgene) control cell lines of CAPAN2 and GCDX62 were generated previously21, and were maintained in their normal growth medium supplemented with 1μg/mL puromycin. siRNA transfection For transient knockdownexperiments, 5 × 105 cellswere seeded in 6-well plates and immediately transfected with a mixture of 10μL Lipofectamine2000 (Thermo Fisher Scientific), 6μL of 20μM target-specific siRNA (or non-targeting siRNA as control), and 200μL Opti-MEM (Thermo Fisher Scientific) after 15min incubation of the transfection mixture at room temperature (RT). ..

    Article Title: Isoform specific regulation of osteopontin by AKT2 in hepatocytes and livers.
    Article Snippet: Elevated levels of osteopontin (OPN), an inflammatory cytokine, are correlated with chronic inflammatory conditions and liver cancer.. In this study, we explored the regulation of OPN in liver and hepatocytes by AKT1 vs. AKT2, the two AKT isoforms expressed in hepatocytes and livers.. Using a mouse model lacking PTEN (phosphatase and tensin homologue deleted on chromosome 10), the negative regulator of phosphatidylinositol 3-kinase (PI3K)/AKT signaling, expression of secreted phosphoprotein 1 (Spp1), the gene encoding OPN, was found to be the topmost significantly upregulated gene in the liver.

    shRNA:

    Article Title: K-Homology Splicing Regulatory Protein (KSRP) Augments Survival and Proliferation of Human Melanoma Cells
    Article Snippet: Cells were seeded in Dulbecco’s Modified Eagle’s Medium (DMEM, Thermo Fisher Scientific, Waltham, MA, USA) with 10% fetal bovine serum (Thermo Fisher Scientific, Waltham, MA, USA), 100 U/mL penicillin, and 100 μg/mL streptomycin (Thermo Fisher Scientific, Waltham, MA, USA) at 37 °C in 5% CO 2 . .. For KSRP knoc down, 293 T cells (5 × 10 6 /well) were transfected with KSRP shRNA (Dharmacon A Horizon Discovery Group company, Lafayette, CO, USA) or empty vector (pLVX-IRES-Puro, 50 nM, (Addgene, Watertown, MA, USA), using PolyJet reagent (SignaGen Laboratories, Rockville, MD, USA) according to the manufacturer’s protocol. ..

    Over Expression:

    Article Title: Spatial tumor immune heterogeneity facilitates subtype co-existence and therapy response in pancreatic cancer
    Article Snippet: .. Patient-derived primary cell line GCDX62 was maintained in a 3:1 mixture of Keratinocyte-SFM (KSF; Thermo Fisher Scientific; supplemented with 2% (v/v) FCS, 1% (v/v) Penicillin-streptomycin, bovine pituitary extract (BPE), and human epidermal growth factor) and RPMI 1640 containing 10% (v/v) FCS. cJUN overexpression (cJUN-OE; construct pMSCV-cJUN, no. 34898, addgene) and empty vector (EV; construct MSCV, no. 68469, addgene) control cell lines of CAPAN2 and GCDX62 were generated previously21, and were maintained in their normal growth medium supplemented with 1μg/mL puromycin. siRNA transfection For transient knockdownexperiments, 5 × 105 cellswere seeded in 6-well plates and immediately transfected with a mixture of 10μL Lipofectamine2000 (Thermo Fisher Scientific), 6μL of 20μM target-specific siRNA (or non-targeting siRNA as control), and 200μL Opti-MEM (Thermo Fisher Scientific) after 15min incubation of the transfection mixture at room temperature (RT). ..

    Construct:

    Article Title: Spatial tumor immune heterogeneity facilitates subtype co-existence and therapy response in pancreatic cancer
    Article Snippet: .. Patient-derived primary cell line GCDX62 was maintained in a 3:1 mixture of Keratinocyte-SFM (KSF; Thermo Fisher Scientific; supplemented with 2% (v/v) FCS, 1% (v/v) Penicillin-streptomycin, bovine pituitary extract (BPE), and human epidermal growth factor) and RPMI 1640 containing 10% (v/v) FCS. cJUN overexpression (cJUN-OE; construct pMSCV-cJUN, no. 34898, addgene) and empty vector (EV; construct MSCV, no. 68469, addgene) control cell lines of CAPAN2 and GCDX62 were generated previously21, and were maintained in their normal growth medium supplemented with 1μg/mL puromycin. siRNA transfection For transient knockdownexperiments, 5 × 105 cellswere seeded in 6-well plates and immediately transfected with a mixture of 10μL Lipofectamine2000 (Thermo Fisher Scientific), 6μL of 20μM target-specific siRNA (or non-targeting siRNA as control), and 200μL Opti-MEM (Thermo Fisher Scientific) after 15min incubation of the transfection mixture at room temperature (RT). ..

    Plasmid Preparation:

    Article Title: Spatial tumor immune heterogeneity facilitates subtype co-existence and therapy response in pancreatic cancer
    Article Snippet: .. Patient-derived primary cell line GCDX62 was maintained in a 3:1 mixture of Keratinocyte-SFM (KSF; Thermo Fisher Scientific; supplemented with 2% (v/v) FCS, 1% (v/v) Penicillin-streptomycin, bovine pituitary extract (BPE), and human epidermal growth factor) and RPMI 1640 containing 10% (v/v) FCS. cJUN overexpression (cJUN-OE; construct pMSCV-cJUN, no. 34898, addgene) and empty vector (EV; construct MSCV, no. 68469, addgene) control cell lines of CAPAN2 and GCDX62 were generated previously21, and were maintained in their normal growth medium supplemented with 1μg/mL puromycin. siRNA transfection For transient knockdownexperiments, 5 × 105 cellswere seeded in 6-well plates and immediately transfected with a mixture of 10μL Lipofectamine2000 (Thermo Fisher Scientific), 6μL of 20μM target-specific siRNA (or non-targeting siRNA as control), and 200μL Opti-MEM (Thermo Fisher Scientific) after 15min incubation of the transfection mixture at room temperature (RT). ..

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner.
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of SpyCas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sgSSEA, Additional file 1: Table S4) or empty vector (pT-sgControl; pTargetF, Addgene #62226). ..

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of Spy Cas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sg SSEA , Additional file 1: Table S4) or empty vector (pT-sg Control ; pTargetF, Addgene #62226). ..

    Article Title: The TET3/GATA6 Axis Drives Lipid Metabolism and Therapeutic Vulnerabilities in Pancreatic Ductal Adenocarcinoma
    Article Snippet: .. Empty vector (Addgene, #120426) was transduced into wild‐type and TET3_KO cells as control groups. ..

    Article Title: Isoform specific regulation of osteopontin by AKT2 in hepatocytes and livers.
    Article Snippet: Elevated levels of osteopontin (OPN), an inflammatory cytokine, are correlated with chronic inflammatory conditions and liver cancer.. In this study, we explored the regulation of OPN in liver and hepatocytes by AKT1 vs. AKT2, the two AKT isoforms expressed in hepatocytes and livers.. Using a mouse model lacking PTEN (phosphatase and tensin homologue deleted on chromosome 10), the negative regulator of phosphatidylinositol 3-kinase (PI3K)/AKT signaling, expression of secreted phosphoprotein 1 (Spp1), the gene encoding OPN, was found to be the topmost significantly upregulated gene in the liver.

    Article Title: The TET3/GATA6 Axis Drives Lipid Metabolism and Therapeutic Vulnerabilities in Pancreatic Ductal Adenocarcinoma
    Article Snippet: GATA6 expression vector (Addgene, #120445) was packaged into a lentivirus transduction system and used to infect cancer cells. .. Empty vector (Addgene, #120426) was transduced into wild‐type cells as a control group. ..

    Control:

    Article Title: Spatial tumor immune heterogeneity facilitates subtype co-existence and therapy response in pancreatic cancer
    Article Snippet: .. Patient-derived primary cell line GCDX62 was maintained in a 3:1 mixture of Keratinocyte-SFM (KSF; Thermo Fisher Scientific; supplemented with 2% (v/v) FCS, 1% (v/v) Penicillin-streptomycin, bovine pituitary extract (BPE), and human epidermal growth factor) and RPMI 1640 containing 10% (v/v) FCS. cJUN overexpression (cJUN-OE; construct pMSCV-cJUN, no. 34898, addgene) and empty vector (EV; construct MSCV, no. 68469, addgene) control cell lines of CAPAN2 and GCDX62 were generated previously21, and were maintained in their normal growth medium supplemented with 1μg/mL puromycin. siRNA transfection For transient knockdownexperiments, 5 × 105 cellswere seeded in 6-well plates and immediately transfected with a mixture of 10μL Lipofectamine2000 (Thermo Fisher Scientific), 6μL of 20μM target-specific siRNA (or non-targeting siRNA as control), and 200μL Opti-MEM (Thermo Fisher Scientific) after 15min incubation of the transfection mixture at room temperature (RT). ..

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of Spy Cas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sg SSEA , Additional file 1: Table S4) or empty vector (pT-sg Control ; pTargetF, Addgene #62226). ..

    Article Title: The TET3/GATA6 Axis Drives Lipid Metabolism and Therapeutic Vulnerabilities in Pancreatic Ductal Adenocarcinoma
    Article Snippet: .. Empty vector (Addgene, #120426) was transduced into wild‐type and TET3_KO cells as control groups. ..

    Article Title: The TET3/GATA6 Axis Drives Lipid Metabolism and Therapeutic Vulnerabilities in Pancreatic Ductal Adenocarcinoma
    Article Snippet: GATA6 expression vector (Addgene, #120445) was packaged into a lentivirus transduction system and used to infect cancer cells. .. Empty vector (Addgene, #120426) was transduced into wild‐type cells as a control group. ..

    Generated:

    Article Title: Spatial tumor immune heterogeneity facilitates subtype co-existence and therapy response in pancreatic cancer
    Article Snippet: .. Patient-derived primary cell line GCDX62 was maintained in a 3:1 mixture of Keratinocyte-SFM (KSF; Thermo Fisher Scientific; supplemented with 2% (v/v) FCS, 1% (v/v) Penicillin-streptomycin, bovine pituitary extract (BPE), and human epidermal growth factor) and RPMI 1640 containing 10% (v/v) FCS. cJUN overexpression (cJUN-OE; construct pMSCV-cJUN, no. 34898, addgene) and empty vector (EV; construct MSCV, no. 68469, addgene) control cell lines of CAPAN2 and GCDX62 were generated previously21, and were maintained in their normal growth medium supplemented with 1μg/mL puromycin. siRNA transfection For transient knockdownexperiments, 5 × 105 cellswere seeded in 6-well plates and immediately transfected with a mixture of 10μL Lipofectamine2000 (Thermo Fisher Scientific), 6μL of 20μM target-specific siRNA (or non-targeting siRNA as control), and 200μL Opti-MEM (Thermo Fisher Scientific) after 15min incubation of the transfection mixture at room temperature (RT). ..

    Incubation:

    Article Title: Spatial tumor immune heterogeneity facilitates subtype co-existence and therapy response in pancreatic cancer
    Article Snippet: .. Patient-derived primary cell line GCDX62 was maintained in a 3:1 mixture of Keratinocyte-SFM (KSF; Thermo Fisher Scientific; supplemented with 2% (v/v) FCS, 1% (v/v) Penicillin-streptomycin, bovine pituitary extract (BPE), and human epidermal growth factor) and RPMI 1640 containing 10% (v/v) FCS. cJUN overexpression (cJUN-OE; construct pMSCV-cJUN, no. 34898, addgene) and empty vector (EV; construct MSCV, no. 68469, addgene) control cell lines of CAPAN2 and GCDX62 were generated previously21, and were maintained in their normal growth medium supplemented with 1μg/mL puromycin. siRNA transfection For transient knockdownexperiments, 5 × 105 cellswere seeded in 6-well plates and immediately transfected with a mixture of 10μL Lipofectamine2000 (Thermo Fisher Scientific), 6μL of 20μM target-specific siRNA (or non-targeting siRNA as control), and 200μL Opti-MEM (Thermo Fisher Scientific) after 15min incubation of the transfection mixture at room temperature (RT). ..

    Clonogenic Cell Survival Assay:

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner.
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of SpyCas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sgSSEA, Additional file 1: Table S4) or empty vector (pT-sgControl; pTargetF, Addgene #62226). ..

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of Spy Cas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sg SSEA , Additional file 1: Table S4) or empty vector (pT-sg Control ; pTargetF, Addgene #62226). ..

    Activity Assay:

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner.
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of SpyCas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sgSSEA, Additional file 1: Table S4) or empty vector (pT-sgControl; pTargetF, Addgene #62226). ..

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of Spy Cas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sg SSEA , Additional file 1: Table S4) or empty vector (pT-sg Control ; pTargetF, Addgene #62226). ..

    Bacteria:

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner.
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of SpyCas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sgSSEA, Additional file 1: Table S4) or empty vector (pT-sgControl; pTargetF, Addgene #62226). ..

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of Spy Cas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sg SSEA , Additional file 1: Table S4) or empty vector (pT-sg Control ; pTargetF, Addgene #62226). ..

    Transformation Assay:

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner.
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of SpyCas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sgSSEA, Additional file 1: Table S4) or empty vector (pT-sgControl; pTargetF, Addgene #62226). ..

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of Spy Cas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sg SSEA , Additional file 1: Table S4) or empty vector (pT-sg Control ; pTargetF, Addgene #62226). ..

    Electroporation:

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner.
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of SpyCas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sgSSEA, Additional file 1: Table S4) or empty vector (pT-sgControl; pTargetF, Addgene #62226). ..

    Article Title: Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner
    Article Snippet: .. A The schematic diagram of two-plasmid-based bacterial survival assay for detecting the activity of Spy Cas9 in bacteria. pCas plasmid (Addgene #62225,Additional file 1: Table S2) was transformed into the E. coli MG1655 before an electroporation with pTarget plasmids coding for sgRNA targeting SSEA (pT-sg SSEA , Additional file 1: Table S4) or empty vector (pT-sg Control ; pTargetF, Addgene #62226). ..

    Knockdown:

    Article Title: Interdependence of Pasha and Drosha for localization and function of the Microprocessor in C. elegans.
    Article Snippet: A Discovery V8 Stereo Microscope (Zeiss) was used for selection of mutagenized animals. .. For RNAi knockdown, synchronized L1 larvae were placed on RNAi plates containing IPTG and E. coli HT115 expressing dsRNA matching cdk-9 (Ahringer or Vidal libraries, H25P06.2), ama-1 (Ahringer library, F36A4.7), alg-1/alg-2 (Ahringer library, F48F7.1), pash-1 (Ahringer Nature Communications | (2025) 16:5595 13 library, T22A3.5), drsh-1 (Ahringer library, F26E4.10), or empty vector (L4440, Addgene #1654) and grown at 20 °C74,75. ..

    Expressing:

    Article Title: Interdependence of Pasha and Drosha for localization and function of the Microprocessor in C. elegans.
    Article Snippet: A Discovery V8 Stereo Microscope (Zeiss) was used for selection of mutagenized animals. .. For RNAi knockdown, synchronized L1 larvae were placed on RNAi plates containing IPTG and E. coli HT115 expressing dsRNA matching cdk-9 (Ahringer or Vidal libraries, H25P06.2), ama-1 (Ahringer library, F36A4.7), alg-1/alg-2 (Ahringer library, F48F7.1), pash-1 (Ahringer Nature Communications | (2025) 16:5595 13 library, T22A3.5), drsh-1 (Ahringer library, F26E4.10), or empty vector (L4440, Addgene #1654) and grown at 20 °C74,75. ..



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    a, HCT116 cells stably expressing BRIP1 R162Q were <t>transiently</t> <t>transfected</t> using PEI with empty vector <t>(EV-EGFP)</t> or RNaseH1-WT-eGFP. Transfection efficiency was assessed via EGFP fluorescence. b, immunoblot analysis confirming expression of GFP-tagged constructs in transfected cells. c, Immunofluorescence detection of R-loops using the S9.6 antibody in cells transfected with EGFP or EGFP-RNaseH1. d, Quantification of S9.6 mean fluorescence intensity (MFI) per nucleus. Data represent mean ± SEM of three independent experiments. e, Immunofluorescence detection of G-quadruplex (G4) structures using the BG4 antibody in cells transfected with EGFP or EGFP-RNaseH1. f, Quantification of BG4 fluorescence intensity per nucleus. Data represent mean ± SEM of three independent experiments. g, Representative DNA fiber assay images from HCT116 cells harboring BRIP1 R162Q transfected with empty vector (EV-eGFP) or RNaseH1-WT. DNA replication tracts were sequentially labeled with CldU (red) and IdU (green). h, Quantification of DNA fiber types. RNaseH1-WT expression reduced the proportion of stalled replication forks in cells harboring BRIP1 R162Q. i, While the overall fork speed was not significantly increased upon RNaseH1-WT expression, tracts displayed a more balanced distribution of CldU and IdU incorporation. j, Fork asymmetry analysis. RNaseH1-WT expression reduced fork asymmetry, indicating that left- and right-moving sister forks progressed at more similar speeds. Labeled tracks were visualized by confocal microscopy, and tract lengths were measured on raw LSM images. Lengths (µm) were converted to replication speed (kb/min) using a factor of 2.59 kb/µm. All data represent mean ± SEM from three independent experiments. At least 150 fibers per condition were analyzed in each replicate. Statistical significance was determined using paired two-tailed Student’s t-test (*p < 0.05, **p < 0.01, ***p < 0.001, ns = not significant). c, e, Representative confocal images are shown.
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    a, HCT116 cells stably expressing BRIP1 R162Q were <t>transiently</t> <t>transfected</t> using PEI with empty vector <t>(EV-EGFP)</t> or RNaseH1-WT-eGFP. Transfection efficiency was assessed via EGFP fluorescence. b, immunoblot analysis confirming expression of GFP-tagged constructs in transfected cells. c, Immunofluorescence detection of R-loops using the S9.6 antibody in cells transfected with EGFP or EGFP-RNaseH1. d, Quantification of S9.6 mean fluorescence intensity (MFI) per nucleus. Data represent mean ± SEM of three independent experiments. e, Immunofluorescence detection of G-quadruplex (G4) structures using the BG4 antibody in cells transfected with EGFP or EGFP-RNaseH1. f, Quantification of BG4 fluorescence intensity per nucleus. Data represent mean ± SEM of three independent experiments. g, Representative DNA fiber assay images from HCT116 cells harboring BRIP1 R162Q transfected with empty vector (EV-eGFP) or RNaseH1-WT. DNA replication tracts were sequentially labeled with CldU (red) and IdU (green). h, Quantification of DNA fiber types. RNaseH1-WT expression reduced the proportion of stalled replication forks in cells harboring BRIP1 R162Q. i, While the overall fork speed was not significantly increased upon RNaseH1-WT expression, tracts displayed a more balanced distribution of CldU and IdU incorporation. j, Fork asymmetry analysis. RNaseH1-WT expression reduced fork asymmetry, indicating that left- and right-moving sister forks progressed at more similar speeds. Labeled tracks were visualized by confocal microscopy, and tract lengths were measured on raw LSM images. Lengths (µm) were converted to replication speed (kb/min) using a factor of 2.59 kb/µm. All data represent mean ± SEM from three independent experiments. At least 150 fibers per condition were analyzed in each replicate. Statistical significance was determined using paired two-tailed Student’s t-test (*p < 0.05, **p < 0.01, ***p < 0.001, ns = not significant). c, e, Representative confocal images are shown.
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    Image Search Results


    a, HCT116 cells stably expressing BRIP1 R162Q were transiently transfected using PEI with empty vector (EV-EGFP) or RNaseH1-WT-eGFP. Transfection efficiency was assessed via EGFP fluorescence. b, immunoblot analysis confirming expression of GFP-tagged constructs in transfected cells. c, Immunofluorescence detection of R-loops using the S9.6 antibody in cells transfected with EGFP or EGFP-RNaseH1. d, Quantification of S9.6 mean fluorescence intensity (MFI) per nucleus. Data represent mean ± SEM of three independent experiments. e, Immunofluorescence detection of G-quadruplex (G4) structures using the BG4 antibody in cells transfected with EGFP or EGFP-RNaseH1. f, Quantification of BG4 fluorescence intensity per nucleus. Data represent mean ± SEM of three independent experiments. g, Representative DNA fiber assay images from HCT116 cells harboring BRIP1 R162Q transfected with empty vector (EV-eGFP) or RNaseH1-WT. DNA replication tracts were sequentially labeled with CldU (red) and IdU (green). h, Quantification of DNA fiber types. RNaseH1-WT expression reduced the proportion of stalled replication forks in cells harboring BRIP1 R162Q. i, While the overall fork speed was not significantly increased upon RNaseH1-WT expression, tracts displayed a more balanced distribution of CldU and IdU incorporation. j, Fork asymmetry analysis. RNaseH1-WT expression reduced fork asymmetry, indicating that left- and right-moving sister forks progressed at more similar speeds. Labeled tracks were visualized by confocal microscopy, and tract lengths were measured on raw LSM images. Lengths (µm) were converted to replication speed (kb/min) using a factor of 2.59 kb/µm. All data represent mean ± SEM from three independent experiments. At least 150 fibers per condition were analyzed in each replicate. Statistical significance was determined using paired two-tailed Student’s t-test (*p < 0.05, **p < 0.01, ***p < 0.001, ns = not significant). c, e, Representative confocal images are shown.

    Journal: bioRxiv

    Article Title: Role of a childhood cancer-linked BRIP1/FANCJ germline variant in genomic instability and cancer cell vulnerability

    doi: 10.64898/2026.03.24.714005

    Figure Lengend Snippet: a, HCT116 cells stably expressing BRIP1 R162Q were transiently transfected using PEI with empty vector (EV-EGFP) or RNaseH1-WT-eGFP. Transfection efficiency was assessed via EGFP fluorescence. b, immunoblot analysis confirming expression of GFP-tagged constructs in transfected cells. c, Immunofluorescence detection of R-loops using the S9.6 antibody in cells transfected with EGFP or EGFP-RNaseH1. d, Quantification of S9.6 mean fluorescence intensity (MFI) per nucleus. Data represent mean ± SEM of three independent experiments. e, Immunofluorescence detection of G-quadruplex (G4) structures using the BG4 antibody in cells transfected with EGFP or EGFP-RNaseH1. f, Quantification of BG4 fluorescence intensity per nucleus. Data represent mean ± SEM of three independent experiments. g, Representative DNA fiber assay images from HCT116 cells harboring BRIP1 R162Q transfected with empty vector (EV-eGFP) or RNaseH1-WT. DNA replication tracts were sequentially labeled with CldU (red) and IdU (green). h, Quantification of DNA fiber types. RNaseH1-WT expression reduced the proportion of stalled replication forks in cells harboring BRIP1 R162Q. i, While the overall fork speed was not significantly increased upon RNaseH1-WT expression, tracts displayed a more balanced distribution of CldU and IdU incorporation. j, Fork asymmetry analysis. RNaseH1-WT expression reduced fork asymmetry, indicating that left- and right-moving sister forks progressed at more similar speeds. Labeled tracks were visualized by confocal microscopy, and tract lengths were measured on raw LSM images. Lengths (µm) were converted to replication speed (kb/min) using a factor of 2.59 kb/µm. All data represent mean ± SEM from three independent experiments. At least 150 fibers per condition were analyzed in each replicate. Statistical significance was determined using paired two-tailed Student’s t-test (*p < 0.05, **p < 0.01, ***p < 0.001, ns = not significant). c, e, Representative confocal images are shown.

    Article Snippet: For R-loop removal, cells were transiently transfected with an EGFP empty vector control (pEGFP-C1, Takara Bio, #632470), EGFP-tagged RNaseH1 wild-type (WT), or the catalytically inactive RNaseH1 D145N mutant as indicated.

    Techniques: Stable Transfection, Expressing, Transfection, Plasmid Preparation, Fluorescence, Western Blot, Construct, Immunofluorescence, Labeling, Confocal Microscopy, Two Tailed Test